Computational scientist obsessed with quantitative analysis of complex natural and social systems, and advancing open scholarship. We do data analysis, modeling and simulations, with a particular focus on microbial and societal ecosystems.
Work
University of Turku
|
Associate Professor
Finland
→
Education
Aalto University
Finland
→
Doctor of Science in Technology
University of Helsinki
Finland
→
Bachelor of Science / Practical Philosophy
Helsinki University of Technology
Finland
→
Master of Science in Technology
Publications
Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles
other
microbiome R package (v.3.5)
other
The gut microbiome is a significant risk factor for future chronic lung disease
other
Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults
journal-article
Enhancing biomarkers with co-abundance
other
Distinct Diet-Microbiota-Metabolism Interactions in Overweight and Obese Pregnant Women: a Metagenomics Approach
journal-article
Role of Gut Microbiota in Statin-Associated New-Onset Diabetes—a Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort
other
What are patterns of rise and decline?
other
Interdisciplinary collaboration in studying newspaper materiality
CEUR Workshop Proceedings
conference-paper
Integrating open science in the humanities: the case of computational history
other
Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats
Nutrients
journal-article
Integrating open science in the humanities: the case of computational history
other
Integrating open science in the humanities: the case of computational history
other
Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process
journal-article
Gut microbiota-derived extracellular vesicles form a distinct entity from gut microbiota
other
Gut microbiota composition is associated with temperament traits in infants
journal-article
Gut Microbiota and Host Gene Mutations in Colorectal Cancer Patients and Controls of Iranian and Finnish Origin
journal-article
Gut Microbiota Composition in Mid-Pregnancy Is Associated with Gestational Weight Gain but Not Prepregnancy Body Mass Index
journal-article
Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats
Nutrients
journal-article
Gut Microbiome as a Risk Factor for Future CKD
other
Learning and teaching biological data science in the Bioconductor community
other
Fractional modelling of COVID-19 transmission incorporating asymptomatic and super-spreader individuals
other
A Quantitative Approach to Book-Printing in Sweden and Finland, 1640–1828
Historical Methods: A Journal of Quantitative and Interdisciplinary History
journal-article
A Quantitative Approach to Book-Printing in Sweden and Finland, 1640–1828
Historical Methods: A Journal of Quantitative and Interdisciplinary History
journal-article
Laki estää tehokkaiden tutkimusmenetelmien käytön
other
Bibliographic Data Science and the History of the Book (c. 1500–1800)
journal-article
Fermented foods affect the seasonal stability of gut bacteria in an Indian rural population
other
Microbiome data science
other
FdeSolver: A Julia Package for Solving Fractional Differential Equations
other
International Campaign to Abolish Nuclear Weapons (ICAN). Public appeal to the Finnish parliament to join the United Nations international agreement to ban nuclear weapons. Signed together with 121 Finnish influencers in research, culture and politics. January 2021.
other
Examining the healthy human microbiome concept
other
Examining the Early Modern Canon: The English Short Title Catalogue and Large-Scale Patterns of Cultural Production
other
Opening academic publishing - Development and application of systematic evaluation criteria
report
Reply to the Letter to the Editor: Gut microbiota composition is associated with temperament traits in infants
other
Opening academic publishing - Development and application of systematic evaluation criteria
report
Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis
other
COMPREHENSIVE BIOMARKER PROFILING OF HYPERTENSION IN 36,985 FINNISH INDIVIDUALS
other
Breast Milk Proteome: Changes in the Different Stages of Lactation and Impacts of Gestational Diabetes Mellitus and Body Mass Index
other
A Hierarchical Ornstein-Uhlenbeck Model for Stochastic Time Series Analysis
Lecture Notes in Computer Science
conference-paper
A Hierarchical Ornstein-Uhlenbeck Model for Stochastic Time Series Analysis
Lecture Notes in Computer Science
conference-paper
Best practices in bibliographic data science
other
Microbial communities as dynamical systems
Current Opinion in Microbiology
other
Microbial communities as dynamical systems
Current Opinion in Microbiology
other
Microbial communities as dynamical systems
Current Opinion in Microbiology
other
Associations between gut microbiome and circulating cytokines: a cross-sectional analysis in the FINRISK 2002 population cohort
other
Prebiotic Xylo-oligosaccharides Targeting Faecalibacterium prausnitzii Prevent High Fat Diet-induced Hepatic Steatosis in Rats
working-paper
Association between butyrate-producing gut bacteria and the risk of infectious disease hospitalisation : results from two observational, population-based microbiome studies
other
Interdisciplinary collaboration in studying newspaper materiality
CEUR Workshop Proceedings
conference-paper
Open Data Science
other
Assessing the safety of microbiome perturbations
other
Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies
other
Analytical determination of editions from bibliographic metadata
Studia Humaniora Ouluensia
conference-paper
Multi-stability and the origin of microbial community types
journal-article
Analytical determination of editions from bibliographic metadata
Studia Humaniora Ouluensia
conference-paper
Alchemy & algorithms: perspectives on the philosophy and history of open science
Research Ideas and Outcomes
other
Alchemy & algorithms: perspectives on the philosophy and history of open science
other
A National Public Sphere? Analyzing the Language, Location, and Form of Newspapers in Finland, 1771–1917
journal-article
Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects
journal-article
Print culture and economic constraints : A quantitative analysis of book prices in eighteenth-century Britain
other
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society
other
Diet, perceived intestinal well-being and compositions of fecal microbiota and short chain fatty acids in oat-using subjects with celiac disease or gluten sensitivity
journal-article
Association of Long-Term Habitual Dietary Fiber Intake since Infancy with Gut Microbiota Composition in Young Adulthood
other
Scaling up bibliographic data science
CEUR Workshop Proceedings
conference-paper
Scaling up bibliographic data science
CEUR Workshop Proceedings
conference-paper
Bone marrow metabolism is affected by body weight and response to exercise training varies according to anatomical location
other
Stool Microbiota Composition Differs in Patients with Stomach, Colon, and Rectal Neoplasms
journal-article
Stool Microbiota Composition Differs in Patients with Stomach, Colon, and Rectal Neoplasms
Digestive Diseases and Sciences
journal-article
The Emerging Paradigm of Bibliographic Data Science
other
Maternal prenatal psychological distress and hair cortisol levels associate with infant fecal microbiota composition at 2.5 months of age
journal-article
Fecal microbiota profiles of growing pigs and their relation to growth performance
other
The Emerging Paradigm of Bibliographic Data Science
other
Fewer culturable Lactobacillaceae species identified in faecal samples of pigs performing manipulative behaviour
other
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering
working-paper
Greengenes2 unifies microbial data in a single reference tree
journal-article
Multikingdom oral microbiome interactions in early-onset cryptogenic ischemic stroke
other
Associations between gut microbiota and incident fractures in the FINRISK cohort
other
Epidemic transmission modeling with fractional derivatives and environmental pathogens
other
Integration of polygenic and gut metagenomic risk prediction for common diseases
other
Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential Equations
other
Regular Exercise Training Induces More Changes on Intestinal Glucose Uptake from Blood and Microbiota Composition in Leaner Compared to Heavier Individuals in Monozygotic Twins Discordant for BMI
other
Taxonomic signatures of cause-specific mortality risk in human gut microbiome
journal-article
Microbiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development
other
iSEEtree: interactive explorer for hierarchical data
other
Infant gut microbiota and negative and fear reactivity
other
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
other
A cohort study in family triads : impact of gut microbiota composition and early life exposures on intestinal resistome during the first two years of life
other
Perinatal depressive and anxiety symptoms are associated with gut microbiota in pregnant women with overweight and obesity
other
Shotgun metagenomic analysis of the oral microbiome in gingivitis: a nested case-control study
other
Gut microbiome-derived bacterial extracellular vesicles in patients with solid tumours
other
Modelling spatial patterns in host-associated microbial communities
other
Gender differences in global antimicrobial resistance
other
A toolbox of machine learning software to support microbiome analysis
other
Maternal pre- and postnatal stress and maternal and infant gut microbiota features
other
Aberrations in the early pregnancy serum metabolic profile in women with prediabetes at two years postpartum
other
Skin microbiota variation in Indian families
other
Elementary methods provide more replicable results in microbial differential abundance analysis
other
Links between gut microbiota with specific serum metabolite groups in pregnant women with overweight or obesity
other
Exit time as a measure of ecological resilience
journal-article
Associations of alcohol with the human gut microbiome and prospective health outcomes in the FINRISK 2002 cohort
other
Corpus Linguistics and Eighteenth Century Collections Online (ECCO)
journal-article
Ebola epidemic model with dynamic population and memory
other
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
other
Variation and prognostic potential of the gut antibiotic resistome in the FINRISK 2002 cohort
other
Gut microbiome and atrial fibrillation: results from a large population-based study
other
Retrieval and Analysis of Eurostat Open Data with the eurostat Package
journal-article
Reconstructing intellectual networks: From the ESTC’s bibliographic metadata to historical material
other
Gut microbiota composition and function in pregnancy as determinants of prediabetes at two-year postpartum
other
Quantifying bias and uncertainty in historical data collections with probabilistic programming
other
Probabilistic analysis of early modern British book prices
other
The Anatomy of eighteenth Century Collections online (eCCO)1
journal-article
Probabilistic Multivariate Early Warning Signals
other
Potential pathobionts in vaginal microbiota are affected by fish oil and/or probiotics intervention in overweight and obese pregnant women
journal-article
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
other
Wrangling with non-standard data
other
Author Correction: Greengenes2 unifies microbial data in a single reference tree (Nature Biotechnology, (2023), 10.1038/s41587-023-01845-1)
other
Association of leisure time physical activity with gut microbiota composition in early adulthood
other
Digitaaliset ihmistieteet ja historiantutkimus
other
Effects of Obesity and Exercise on Hepatic and Pancreatic Lipid Content and Glucose Metabolism : PET Studies in Twins Discordant for BMI
other
Elementary methods provide more replicable results in microbial differential abundance analysis
other
Learning and teaching biological data science in the Bioconductor community
PLOS Computational Biology
journal-article
Gut microbiota-derived extracellular vesicles form a distinct entity from gut microbiota
mSystems
journal-article
Gut Microbiome as a Risk Factor for Future CKD
Kidney International Reports
journal-article
Fractional modelling of COVID-19 transmission incorporating asymptomatic and super-spreader individuals
Mathematical Biosciences
journal-article
Fermented foods affect the seasonal stability of gut bacteria in an Indian rural population
Nature Communications
journal-article
Examining the healthy human microbiome concept
Nature Reviews Microbiology
journal-article
Assessing the safety of microbiome perturbations
Microbial Genomics
journal-article
Lifestyle associates with unique resistome and microbiome signatures in children
preprint
Biome-specific genome catalogues reveal functional potential of shallow sequencing
preprint
Associations of alcohol with the human gut microbiome and prospective health outcomes in the FINRISK 2002 cohort
European Journal of Nutrition
journal-article
Associations of alcohol with the human gut microbiome and prospective health outcomes in the FINRISK 2002 cohort
European Journal of Nutrition
journal-article
Elementary methods provide more replicable results in microbial differential abundance analysis
Briefings in Bioinformatics
journal-article
Skin microbiota variation in Indian families
PeerJ
journal-article
Skin microbiota variation in Indian families
PeerJ
journal-article
LimROTS: A Hybrid Method Integrating Empirical Bayes and Reproducibility-Optimized Statistics for Robust Differential Expression Analysis
preprint
LimROTS: A Hybrid Method Integrating Empirical Bayes and Reproducibility-Optimized Statistics for Robust Analysis of Proteomics Data
BioRxiv
journal-article
Maternal pre- and postnatal stress and maternal and infant gut microbiota features
Psychoneuroendocrinology
journal-article
Maternal pre- and postnatal stress and maternal and infant gut microbiota features
Psychoneuroendocrinology
journal-article
Association of leisure time physical activity with gut microbiota composition in early adulthood
Scientific Reports
journal-article
Examining the healthy human microbiome concept (Oct, 10.1038/s41579-024-01107-0, 2024)
Nature Reviews Microbiology
journal-article
Fractional modelling of COVID-19 transmission incorporating asymptomatic and super-spreader individuals
ArXiv
journal-article
Gender differences in global antimicrobial resistance
Npj Biofilms and Microbiomes
journal-article
Gut microbiome-derived bacterial extracellular vesicles in patients with solid tumours
Journal of Advanced Research
journal-article
Perinatal depressive and anxiety symptoms are associated with gut microbiota in pregnant women with overweight and obesity
Brain, Behavior, & Immunity Health
journal-article
Reconstructing ecological community dynamics from limited observations
ArXiv
journal-article
Variation and prognostic potential of the gut antibiotic resistome in the FINRISK 2002 cohort
Nature Communications
journal-article
iSEEtree: interactive explorer for hierarchical data
Bioinformatics Advances
journal-article
Epidemic transmission modeling with fractional derivatives and environmental pathogens
International Journal of Biomathematics
journal-article
A cohort study in family triads: impact of gut microbiota composition and early life exposures on intestinal resistome during the first two years of life
Gut Microbes
journal-article
Role of Gut Microbiota in Statin-Associated New-Onset Diabetes-A Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort
Arteriosclerosis, Thrombosis, and Vascular Biology
journal-article
iSEEtree: interactive explorer for hierarchical data
Bioinformatics Advances
journal-article
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy (vol 7, pg e00167, 2023)
mSystems
journal-article
Effects of Obesity and Exercise on Hepatic and Pancreatic Lipid Content and Glucose Metabolism: PET Studies in Twins Discordant for BMI
Biomolecules
journal-article
Regular Exercise Training Induces More Changes on Intestinal Glucose Uptake from Blood and Microbiota Composition in Leaner Compared to Heavier Individuals in Monozygotic Twins Discordant for BMI
Nutrients
journal-article
Microbiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development
Nature Medicine
journal-article
Microbiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development
Nature Medicine
journal-article
Regular Exercise Training Induces More Changes on Intestinal Glucose Uptake from Blood and Microbiota Composition in Leaner Compared to Heavier Individuals in Monozygotic Twins Discordant for BMI
Nutrients
journal-article
Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential Equations
ACM Transactions on Mathematical Software
journal-article
Learning and teaching biological data science in the Bioconductor community
ArXiv
journal-article
Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential Equations
ACM Transactions on Mathematical Software
journal-article
Painting the Mona Lisa?
Septentrio Conference Series
journal-article
Epidemic transmission modeling with fractional derivatives and environmental pathogens
International Journal of Biomathematics
journal-article
Integration of polygenic and gut metagenomic risk prediction for common diseases
Nature Aging
journal-article
Shotgun metagenomic analysis of the oral microbiome in gingivitis: a nested case-control study
Journal of Oral Microbiology
journal-article
Associations between gut microbiota and incident fractures in the FINRISK cohort
npj Biofilms and Microbiomes
journal-article
Integrating host genetic and gut metagenomic risk prediction for common diseases
European Journal of Human Genetics
journal-article
Associations between gut microbiota and incident fractures in the FINRISK cohort
Npj Biofilms and Microbiomes
journal-article
Multikingdom oral microbiome interactions in early-onset cryptogenic ischemic stroke
ISME Communications
journal-article
Greengenes2 unifies microbial data in a single reference tree (Jul, 10.1038/s41587-023-01845-1, 2023)
Nature Biotechnology
journal-article
Multikingdom oral microbiome interactions in early-onset cryptogenic ischemic stroke
ISME Communications
journal-article
Greengenes2 unifies microbial data in a single reference tree
Nature Biotechnology
journal-article
Fewer culturable Lactobacillaceae species identified in faecal samples of pigs performing manipulative behaviour
Scientific Reports
journal-article
Fecal microbiota profiles of growing pigs and their relation to growth performance
Plos One
journal-article
Daily skin-to-skin contact alters microbiota development in healthy full-term infants
journal-article
Daily skin-to-skin contact alters microbiota development in healthy full-term infants
Gut Microbes
journal-article
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort (vol 54, pg 134, 2022)
Nature Genetics
journal-article
Bone marrow metabolism is affected by body weight and response to exercise training varies according to anatomical location
Diabetes, Obesity and Metabolism
journal-article
Associations between Stress Responses and Gut Microbiota Metabolites among Maternal Prenatal Psychological Distress Exposed Infants - FinnBrain Birth Cohort Study
Psychoneuroendocrinology
journal-article
Print culture and economic constraints: A quantitative analysis of book prices in eighteenth-century Britain
Explorations in Economic History
journal-article
Association of Long-Term Habitual Dietary Fiber Intake since Infancy with Gut Microbiota Composition in Young Adulthood
The Journal of Nutrition
journal-article
Validating and Extracting Information from National Identification Numbers in R: The Case of Finland and Sweden
The R Journal
journal-article
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society
Microbial Biotechnology
journal-article
Shotgun metagenomic analysis of the oral microbiome in gingivitis: a nested case-control study
Journal of Oral Microbiology
journal-article
Association between butyrate-producing gut bacteria and the risk of infectious disease hospitalisation: results from two observational, population-based microbiome studies
The Lancet Microbe
journal-article
Effects of Obesity and Exercise on Hepatic and Pancreatic Lipid Content and Glucose Metabolism: PET Studies in Twins Discordant for BMI
Biomolecules
journal-article
A cohort study in family triads: impact of gut microbiota composition and early life exposures on intestinal resistome during the first two years of life
Gut Microbes
journal-article
Biochemical analyses can complement sequencing-based ARG load monitoring: a case study in Indian hospital sewage networks
preprint
Infant gut microbiota and negative and fear reactivity
Development and Psychopathology
journal-article
Skin microbiota variation in Indian families
preprint
Skin microbiota variation in Indian families
BioRxiv
journal-article
Microbiome-based risk prediction in incident heart failure: a community challenge
other
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
Frontiers in Microbiology
journal-article
Ebola epidemic model with dynamic population and memory
Chaos, Solitons & Fractals
journal-article
Dealing with dimensionality: the application of machine learning to multi-omics data
other
A toolbox of machine learning software to support microbiome analysis
Frontiers in Microbiology
journal-article
Dealing with dimensionality: the application of machine learning to multi-omics data
Bioinformatics
journal-article
Dealing with dimensionality: the application of machine learning to multi-omics data
Bioinformatics
journal-article
What are patterns of rise and decline?
Royal Society Open Science
journal-article
miaSim: an R/Bioconductor package to easily simulate microbial community dynamics
Methods in Ecology and Evolution
journal-article
miaSim: an R/Bioconductor package to easily simulate microbial community dynamics
Methods in Ecology and Evolution
journal-article
The preterm gut microbiota and administration routes of different probiotics: a randomized controlled trial
Pediatric Research
journal-article
Machine learning approaches in microbiome research: challenges and best practices
Frontiers in Microbiology
journal-article
The impact of fish oil and/or probiotics intervention on vaginal microbiota in overweight and obese pregnant women
Annals of Nutrition and Metabolism
journal-article
The gut microbiome is a significant risk factor for future chronic lung disease
Journal of Allergy and Clinical Immunology
journal-article
Impacts of maternal microbiota and microbial metabolites on fetal intestine, brain, and placenta
journal-article
Infant Left Amygdala Volume Is Negatively Associated with Fecal Microbiota Diversity
BioRxiv
journal-article
Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles
Microbiome
journal-article
Machine learning approaches in microbiome research: challenges and best practices
other
Impacts of maternal microbiota and microbial metabolites on fetal intestine, brain, and placenta
BMC Biology
journal-article
Impacts of maternal microbiota and microbial metabolites on fetal intestine, brain, and placenta
BMC Biology
journal-article
Gut microbiota composition and function in pregnancy as determinants of prediabetes at two-year postpartum
Acta Diabetologica
journal-article
What are patterns of rise and decline?
Royal Society Open Science
journal-article
Gut microbiota composition and function in pregnancy as determinants of prediabetes at two-year postpartum
Acta Diabetologica
journal-article
Gut microbiome and atrial fibrillation-results from a large population-based study
EBioMedicine
journal-article
The preterm gut microbiota and administration routes of different probiotics: a randomized controlled trial
journal-article
Fractional model of COVID–19 with pathogens as shedding effects
ArXiv
journal-article
miaSim: an R/Bioconductor package to easily simulate microbial community dynamics
journal-article
Ebola epidemic model with dynamic population and memory
Chaos, Solitons & Fractals
journal-article
Aberrations in the early pregnancy serum metabolic profile in women with prediabetes at two years postpartum
Metabolomics
journal-article
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting
journal-article
Enhancing biomarkers with co-abundance
Nature Computational Science
journal-article
FdeSolver: A Julia Package for Solving Fractional Differential Equations
ArXiv
journal-article
Gut Microbiome Composition Is Predictive of Incident Type 2 Diabetes in a Population Cohort of 5,572 Finnish Adults
Diabetes Care
journal-article
Infant Fecal Microbiota Composition and Attention to Emotional Faces
Emotion
journal-article
Infant fecal microbiota composition and attention to emotional faces.
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
mSystems
journal-article
Potential pathobionts in vaginal microbiota are affected by fish oil and/or probiotics intervention in overweight and obese pregnant women
Biomedicine & Pharmacotherapy
journal-article
Probabilistic Multivariate Early Warning Signals
Lecture Notes in Computer Science
journal-article
Probabilistic Multivariate Early Warning Signals
book-chapter
Quantifying the impact of ecological memory on the dynamics of interacting communities
PLOS Computational Biology
journal-article
Quantifying the impact of ecological memory on the dynamics of interacting communities
PLOS Computational Biology
journal-article
Quantifying the impact of ecological memory on the dynamics of interacting communities
journal-article
Skin microbiota diversity among genetically unrelated individuals of Indian origin
PeerJ
journal-article
Skin microbiota diversity among genetically unrelated individuals of Indian origin
journal-article
The Anatomy of Eighteenth Century Collections Online (ECCO)
Eighteenth Century Studies
journal-article
Towards standardized and reproducible research in skin microbiomes
Environmental Microbiology
journal-article
Towards standardized and reproducible research in skin microbiomes
Environmental Microbiology
journal-article
Towards standardized and reproducible research in skin microbiomes
other
Rekommendation och checklista för öppen vetenskap inom ömsesidig forsknings-, utvecklings- och innovationsverksamhet mellan forskningsorganisationer och företag
book
Impacts of maternal microbiota and microbial metabolites on fetal intestine, brain and placenta
preprint
An Infancy-Onset 20-Year Dietary Counselling Intervention and Gut Microbiota Composition in Adulthood
Nutrients
journal-article
An Infancy-Onset 20-Year Dietary Counselling Intervention and Gut Microbiota Composition in Adulthood
Nutrients
journal-article
An Infancy-Onset 20-Year Dietary Counselling Intervention and Gut Microbiota Composition in Adulthood
Nutrients
journal-article
An Infancy-Onset 20-Year Dietary Counselling Intervention and Gut Microbiota Composition in Adulthood
journal-article
COMPREHENSIVE BIOMARKER PROFILING OF HYPERTENSION IN 36,985 FINNISH INDIVIDUALS
Journal of Hypertension
journal-article
Can gut microbiota throughout the first 10 years of life predict executive functioning in childhood?
Developmental Psychobiology
journal-article
Can gut microbiota throughout the first 10 years of life predict executive functioning in childhood?
journal-article
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
Nature Genetics
journal-article
Comprehensive biomarker profiling of hypertension in 36 985 Finnish individuals
Journal of Hypertension
journal-article
Distinct Diet-Microbiota-Metabolism Interactions in Overweight and Obese Pregnant Women: a Metagenomics Approach
Microbiology Spectrum
journal-article
Distinct Diet-Microbiota-Metabolism Interactions in Overweight and Obese Pregnant Women: a Metagenomics Approach
Microbiology Spectrum
journal-article
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting
Cell Metabolism
journal-article
Enhancing biomarkers with co-abundance
Nature Computational Science
journal-article
Open science recommendation and checklist for research, development and innovation activities in collaboration between research organisations and companies
book
Targeting Gut Microbiota to Treat Hypertension: A Systematic Review
International Journal of Environmental Research and Public Health
journal-article
Comprehensive biomarker profiling of hypertension in 36 985 Finnish individuals
journal-article
Quantifying the impact of ecological memory on the dynamics of interacting communities
preprint
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Frontiers in Microbiology
journal-article
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Frontiers in Microbiology
other
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Frontiers in Microbiology
other
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Frontiers in Microbiology
other
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Frontiers in Microbiology
other
Corpus Linguistics and Eighteenth Century Collections Online (ECCO)
Research in Corpus Linguistics
journal-article
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
Genome Research
journal-article
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
journal-article
Exit time as a measure of ecological resilience
Science
journal-article
Exit time as a measure of ecological resilience
Science
journal-article
Gut microbiota diversity but not composition is related to saliva cortisol stress response at the age of 2.5 months
Stress: the International Journal on Biology of Stress
journal-article
Gut microbiota diversity but not composition is related to saliva cortisol stress response at the age of 2.5 months
Stress
journal-article
Gut microbiota diversity but not composition is related to saliva cortisol stress response at the age of 2.5 months
journal-article
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Gut Pathogens
journal-article
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Gut Pathogens
journal-article
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Gut Pathogens
journal-article
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Gut Pathogens
journal-article
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Gut Pathogens
journal-article
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Gut Pathogens
journal-article
Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Gut Pathogens
journal-article
Impact of combined consumption of fish oil and probiotics on the serum metabolome in pregnant women with overweight or obesity
EBioMedicine
journal-article
Impact of combined consumption of fish oil and probiotics on the serum metabolome in pregnant women with overweight or obesity
journal-article
Links between gut microbiome composition and fatty liver disease in a large population sample
Gut Microbes
journal-article
Links between gut microbiome composition and fatty liver disease in a large population sample
journal-article
METABOLIC PROFILING OF HYPERTENSION IN 36,985 FINNISH INDIVIDUALS
JACC: Journal of the American College of Cardiology
journal-article
MULTI-TRAIT GENETIC ANALYSIS OF HYPERTENSION REVEALS CLINICALLY INTERPRETABLE SUBTYPES
JACC: Journal of the American College of Cardiology
journal-article
Modelling spatial patterns in host-associated microbial communities
Environmental Microbiology
journal-article
Modelling spatial patterns in host‐associated microbial communities
Environmental Microbiology
journal-article
Probabilistic early warning signals
Ecology and Evolution
journal-article
Probabilistic early warning signals
Ecology and Evolution
journal-article
Probabilistic early warning signals
journal-article
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions
Frontiers in Microbiology
journal-article
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions
Frontiers in Microbiology
journal-article
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions
Frontiers in Microbiology
journal-article
Systemic cross-talk between brain, gut, and peripheral tissues in glucose homeostasis: effects of exercise training (CROSSYS). Exercise training intervention in monozygotic twins discordant for body weight
BMC Sports Science, Medicine and Rehabilitation
journal-article
Systemic cross-talk between brain, gut, and peripheral tissues in glucose homeostasis: effects of exercise training (CROSSYS). Exercise training intervention in monozygotic twins discordant for body weight
journal-article
Targeting Gut Microbiota to Treat Hypertension: A Systematic Review
International Journal of Environmental Research and Public Health
journal-article
Targeting Gut Microbiota to Treat Hypertension: A Systematic Review
International Journal of Environmental Research and Public Health
journal-article
Targeting Gut Microbiota to Treat Hypertension: A Systematic Review
other
Taxonomic signatures of cause-specific mortality risk in human gut microbiome
Nature Communications
journal-article
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators
Symmetry
journal-article
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators
Symmetry
journal-article
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators
Symmetry
journal-article
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators
Symmetry
journal-article
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators
Symmetry
journal-article
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators
Symmetry
journal-article
Three-Species Lotka-Volterra Model with Respect to Caputo and Caputo-Fabrizio Fractional Operators
Symmetry
journal-article
UNSUPERVISED CLUSTER ANALYSIS OF HYPERTENSIVE INDIVIDUALS IDENTIFIES A ROBUST HIGH-RISK SUBGROUP
Journal of Hypertension
journal-article
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering
International Journal of Environmental Research and Public Health
journal-article
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering
International Journal of Environmental Research and Public Health
journal-article
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering
International Journal of Environmental Research and Public Health
journal-article
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering
International Journal of Environmental Research and Public Health
journal-article
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering
International Journal of Environmental Research and Public Health
journal-article
Xylo-oligosaccharides in prevention of hepatic steatosis and adipose tissue inflammation: associating taxonomic and metabolomic patterns in fecal microbiomes with biclustering
Preprints.org
journal-article
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering
other
Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals
Journal of the American Heart Association
journal-article
Unsupervised hierarchical clustering identifies a metabolically challenged subgroup of hypertensive individuals
Journal of Clinical Hypertension
journal-article
Unsupervised hierarchical clustering identifies a metabolically challenged subgroup of hypertensive individuals
Journal of Clinical Hypertension
journal-article
Unsupervised hierarchical clustering identifies a metabolically challenged subgroup of hypertensive individuals
The Journal of Clinical Hypertension
journal-article
Three-species predator-prey model with respect to Caputo and Caputo-Fabrizio fractional operators
ArXiv
journal-article
Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats
Nutrients
journal-article
Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats
Nutrients
journal-article
Partial restoration of normal intestinal microbiota in morbidly obese women six months after bariatric surgery
journal-article
Partial restoration of normal intestinal microbiota in morbidly obese women six months after bariatric surgery
PeerJ
journal-article
Linking statistical and ecological theory: Hubbell's unified neutral theory of biodiversity as a hierarchical Dirichlet process
ArXiv
journal-article
Intestinal microbiota analysis supports inclusion of gluten-free oats to diet of subjects with celiac disease or gluten sensitivity
Proceedings of the Nutrition Society
other
Intestinal microbiota analysis supports inclusion of gluten-free oats to diet of subjects with celiac disease or gluten sensitivity
Proceedings of the Nutrition Society
other
Intestinal microbiota analysis supports inclusion of gluten-free oats to diet of subjects with celiac disease or gluten sensitivity
Proceedings of the Nutrition Society
journal-article
Gut microbiota composition and saliva cortisol stress response at the age of 2.5 months
Psychoneuroendocrinology
journal-article
Eicosanoid Inflammatory Mediators Are Robustly Associated With Blood Pressure in the General Population
Journal of the American Heart Association
journal-article
Eicosanoid Inflammatory Mediators Are Robustly Associated With Blood Pressure in the General Population
Journal of the American Heart Association
journal-article
Eicosanoid Inflammatory Mediators Are Robustly Associated With Blood Pressure in the General Population
Journal of the American Heart Association
journal-article
Eicosanoid Inflammatory Mediators Are Robustly Associated With Blood Pressure in the General Population
Journal of the American Heart Association
journal-article
Diet, Perceived Intestinal Well-Being and Compositions of Fecal Microbiota and Short Chain Fatty Acids in Oat-Using Subjects with Celiac Disease or Gluten Sensitivity
Nutrients
journal-article
Diet, Perceived Intestinal Well-Being and Compositions of Fecal Microbiota and Short Chain Fatty Acids in Oat-Using Subjects with Celiac Disease or Gluten Sensitivity
Nutrients
journal-article
Diet, Perceived Intestinal Well-Being and Compositions of Fecal Microbiota and Short Chain Fatty Acids in Oat-Using Subjects with Celiac Disease or Gluten Sensitivity
Nutrients
journal-article
Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals
Journal of the American Heart Association
journal-article
Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals
Journal of the American Heart Association
journal-article
Infant fecal microbiota composition and attention to emotional faces
Emotion
journal-article
Infant fecal microbiota composition and attention to emotional faces
Emotion
journal-article
Maternal prenatal psychological distress and hair cortisol levels associate with infant fecal microbiota composition at 2.5 months of age
Psychoneuroendocrinology
journal-article
Scaling Up Bibliographic Data Science
Digital Humanities in the Nordic and Baltic Countries Publications
journal-article
Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota
FEMS Microbiology Ecology
journal-article
Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota
FEMS Microbiology Ecology
journal-article
Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota
FEMS Microbiology Ecology
journal-article
Interdisciplinary Collaboration in Studying Newspaper Materiality
Digital Humanities in the Nordic and Baltic Countries Publications
journal-article
Reconstructing Intellectual Networks
Digital Humanities in the Nordic and Baltic Countries Publications
journal-article
A Quantitative Approach to Book-Printing in Sweden and Finland, 1640–1828
Historical Methods: A Journal of Quantitative and Interdisciplinary History
journal-article
Bibliographic Data Science and the History of the Book (c. 1500–1800)
Cataloging & Classification Quarterly
journal-article
Microbiome data science
Journal of Biosciences
journal-article
Microbiome yarns: The Global Phenotype-Genotype Survey. Episode III: importance of microbiota diversification for microbiome function and biome health
Microbial Biotechnology
journal-article
Microbiome yarns: The Global Phenotype-Genotype Survey. Episode III: importance of microbiota diversification for microbiome function and biome health
Microbial Biotechnology
other
Microbiome yarns: The Global Phenotype-Genotype Survey. Episode III: importance of microbiota diversification for microbiome function and biome health
Microbial Biotechnology
other
Reply to the Letter to the Editor: Gut microbiota composition is associated with temperament traits in infants
Brain, Behavior, and Immunity
journal-article
Alchemy & algorithms: perspectives on the philosophy and history of open science
Research Ideas and Outcomes
journal-article
Microbiome Yarns: human biome reproduction, evolution and visual acuity
Microbial Biotechnology
journal-article
Open Data Science
book-chapter
Microbiome Yarns: human biome reproduction, evolution and visual acuity
other
Open Data Science
Lecture Notes in Computer Science
journal-article
A Hierarchical Ornstein-Uhlenbeck Model for Stochastic Time Series Analysis
book-chapter
Eicosanoid Variation is Strongly Related to Blood Pressure in the General Population
Circulation
journal-article
Microbial communities as dynamical systems
Current Opinion in Microbiology
journal-article
Signatures of ecological processes in microbial community time series
journal-article
Stability estimation of autoregulated genes under Michaelis-Menten-type kinetics
journal-article
A Hierarchical Ornstein-Uhlenbeck Model for Stochastic Time Series Analysis
Lecture Notes in Computer Science
journal-article
Alchemy & algorithms: perspectives on the philosophy and history of open science
Research Ideas and Outcomes
journal-article
Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies
FEMS Microbiology Reviews
journal-article
Multi-stability and the origin of microbial community types
The ISME Journal
journal-article
An Open Science Peer Review Oath
journal-article
Metagenomics meets time series analysis: unraveling microbial community dynamics
Current Opinion in Microbiology
journal-article
Fat, fibre and cancer risk in African Americans and rural Africans
Nature Communications
journal-article
Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river
Scientific Reports
journal-article
Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database
BMC Genomics
journal-article
A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging
Skeletal Muscle
journal-article
A Quantitative Study of History in the English Short-Title Catalogue (ESTC), 1470-1800
LIBER Quarterly
journal-article
Fat, fibre and cancer risk in African Americans and rural Africans
Nature Communications
journal-article
COLONIC MICROBIOME-METABONOME NETWORK INTERACTIONS IN AFRICAN AMERICANS AND NATIVE AFRICANS: A PROSPECTIVE 2-WEEK FOOD EXCHANGE STUDY
Gut
journal-article
Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men
The ISME Journal
journal-article
Copy Number Alterations and Neoplasia-Specific Mutations in MELK, PDCD1LG2, TLN1, and PAX5 at 9p in Different Neoplasias
Genes, Chromosomes and Cancer
journal-article
Binning metagenomic contigs by coverage and composition
Nature Methods
journal-article
Binning metagenomic contigs by coverage and composition
Nature Methods
journal-article
An open science peer review oath
F1000Research
journal-article
Tipping elements in the human intestinal ecosystem.
Nature communications
journal-article
Tipping elements in the human intestinal ecosystem
Nature Communications
journal-article
The Open Science Peer Review Oath
F1000Research
journal-article
Copy Number Alterations and Neoplasia-Specific Mutations in MELK, PDCD1LG2, TLN1, and PAX5 at 9p in Different Neoplasias
Genes Chromosomes & Cancer
journal-article
A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases
Nucleic Acids Research
journal-article
A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases
Nucleic Acids Research
journal-article
Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data
PeerJ
journal-article
Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data.
PeerJ
journal-article
Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review
Briefings in Bioinformatics
journal-article
Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review
Briefings in Bioinformatics
journal-article
RPA: Probabilistic analysis of probe performance and robust summarization
ArXiv
journal-article
Targeted resequencing of 9p in acute lymphoblastic leukemia yields concordant results with array CGH and reveals novel genomic alterations
Genomics
journal-article
Targeted resequencing of 9p in acute lymphoblastic leukemia yields concordant results with array CGH and reveals novel genomic alterations
Genomics
journal-article
The adult intestinal core microbiota is determined by analysis depth and health status
Clinical Microbiology and Infection
journal-article
Fully scalable online-preprocessing algorithm for short oligonucleotide microarray atlases
ArXiv
journal-article
Global modeling of transcriptional responses in interaction networks
ArXiv
journal-article
Homozygous deletions of cadherin genes in chondrosarcoma—an array comparative genomic hybridization study
Cancer Genetics
journal-article
Homozygous deletions of cadherin genes in chondrosarcoma-an array comparative genomic hybridization study
Cancer Genetics
journal-article
MicroRNA profiling in pediatric acute lymphoblastic leukemia: novel prognostic tools
Leukemia & Lymphoma
journal-article
MicroRNA profiling in pediatric acute lymphoblastic leukemia: novel prognostic tools
Leukemia & Lymphoma
journal-article
MicroRNA profiling predicts survival in anti-EGFR treated chemorefractory metastatic colorectal cancer patients with wild-type KRAS and BRAF
Cancer Genetics
journal-article
MicroRNA profiling predicts survival in anti-EGFR treated chemorefractory metastatic colorectal cancer patients with wild-type KRAS and BRAF
Cancer Genetics
journal-article
The adult intestinal core microbiota is determined by analysis depth and health status
Clinical Microbiology and Infection
journal-article
MicroRNA microarrays on archive bone marrow core biopsies of leukemias-Method validation
Leukemia Research
journal-article
Probabilistic analysis of the human transcriptome with side information
ArXiv
journal-article
Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays
Ieee-Acm Transactions on Computational Biology and Bioinformatics
journal-article
Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays
IEEE Transactions on Computational Biology and Bioinformatics
journal-article
MicroRNA microarrays on archive bone marrow core biopsies of leukemias-Method validation
Leukemia Research
journal-article
Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms
Plos One
journal-article
Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms
Plos One
journal-article
Integrative Analysis of microRNA, mRNA and aCGH Data Reveals Asbestos- and Histology-Related Changes in Lung Cancer
Genes Chromosomes & Cancer
journal-article
Integrative Analysis of microRNA, mRNA and aCGH Data Reveals Asbestos- and Histology-Related Changes in Lung Cancer
Genes, Chromosomes and Cancer
journal-article
Dependency detection with similarity constraints
ArXiv
journal-article
Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review
ArXiv
journal-article
Array Comparative Genomic Hybridization Reveals Frequent Alterations of G1/S Checkpoint Genes in Undifferentiated Pleomorphic Sarcoma of Bone
Genes Chromosomes & Cancer
journal-article
Array Comparative Genomic Hybridization Reveals Frequent Alterations of G1/S Checkpoint Genes in Undifferentiated Pleomorphic Sarcoma of Bone
Genes, Chromosomes and Cancer
journal-article
A brief overview on the BioPAX and SBML standards for formal presentation of complex biological knowledge
ArXiv
journal-article
Global modeling of transcriptional responses in interaction networks
Bioinformatics
journal-article
Unique microRNA profile in Dupuytren's contracture supports deregulation of beta-catenin pathway
Modern Pathology
journal-article
Unique microRNA profile in Dupuytren's contracture supports deregulation of beta-catenin pathway
Modern Pathology
journal-article
Global modeling of transcriptional responses in interaction networks
Bioinformatics
journal-article
CDKN2A, NF2, and JUN Are Dysregulated Among Other Genes by miRNAs in Malignant Mesothelioma-A miRNA Microarray Analysis
Genes Chromosomes & Cancer
journal-article
DEPENDENCY DETECTION WITH SIMILARITY CONSTRAINTS
Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing
journal-article
DEPENDENCY DETECTION WITH SIMILARITY CONSTRAINTS
2009 Ieee International Workshop on Machine Learning For Signal Processing
book
CDKN2A , NF2 , and JUN are dysregulated among other genes by miRNAs in malignant mesothelioma-A miRNA microarray analysis
Genes, Chromosomes and Cancer
journal-article
Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines
Bmc Genomics
journal-article
Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines
BMC Genomics
journal-article
Integrating probe-level expression changes across generations of Affymetrix arrays
Nucleic Acids Research
journal-article
Associative clustering for exploring dependencies between functional genomics data sets
Ieee-Acm Transactions on Computational Biology and Bioinformatics
journal-article
Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets
IEEE Transactions on Computational Biology and Bioinformatics
journal-article
Integrating probe-level expression changes across generations of Affymetrix arrays